Recommended Databases and Software

Recommended Databases:

Flybase http://flybase.org/
NCBI http://www.ncbi.nlm.nih.gov/index.html
ENSEMBL http://www.ensembl.org/index.html
ENA https://www.ebi.ac.uk/ena
Popdrowser http://popdrowser.uab.cat/fgb2/gbrowse/dgrp/
Drosophila genome Nexus http://johnpool.net/genomes.html
TaxoDro http://www.taxodros.uzh.ch/
DPDB http://dpdb.uab.cat/DPDB/dpdb.asp
Flygut http://flygut.epfl.ch/
GyDB http://gydb.org/index.php/Main_Page
GOstat http://gostat.wehi.edu.au/cgi-bin/goStat.pl
DAVID https://david.ncifcrf.gov/

 

Recommended free Software:

MEGA http://megasoftware.net/
DnaSP http://www.ub.edu/dnasp/
ADOPS http://sing.ei.uvigo.es/ADOPS/
Protein Pattern Find http://www.bioinformatics.org/sms2/protein_pattern.html
MrBayes http://mrbayes.csit.fsu.edu/
PAML http://abacus.gene.ucl.ac.uk/software/paml.html
Datamonkey http://www.datamonkey.org/
ProSeq http://dps.plants.ox.ac.uk/sequencing/proseq.htm
SplitsTree http://splitstree.org/
RDP http://darwin.uvigo.es/rdp/rdp.html
Chromas http://www.technelysium.com.au/chromas.html
TreeView http://taxonomy.zoology.gla.ac.uk/rod/treeview.html
ClustalX http://www.clustal.org/
TCS http://darwin.uvigo.es/software/tcs.html
Lineage Sequence Discovery http://code.google.com/p/lineagesequencediscovery/
SigDis http://cracs.fc.up.pt/~nf/projects/sigdis/
Lamarck http://evolution.gs.washington.edu/lamarc/index.html
DAMBE http://dambe.bio.uottawa.ca/software.asp
ALTER - file converter http://sing.ei.uvigo.es/ALTER/
Format conversion http://phylogeny.lirmm.fr/phylo_cgi/data_converter.cgi
PileLine http://sing.ei.uvigo.es/pileline/index.php/Downloads
Protein consensus http://coot.embl.de/Alignment/consensus.html
Signal IP server http://www.cbs.dtu.dk/services/SignalP/
Ancestor http://ancestors.bioinfo.uqam.ca/ancestorWeb/
WebLogo http://weblogo.berkeley.edu/logo.cgi
Galaxy https://usegalaxy.org/
dialin + chaos http://dialign.gobics.de/chaos-dialign-submission
CD-HIT-ESt http://weizhong-lab.ucsd.edu/cdhit_suite/cgi-bin/index.cgi?cmd=cd-hit-est
I-TASSER zhanglab.ccmb.med.umich.edu/I-TASSER/
DOCK/PIERR: Protein Docking Server http://clsb.ices.utexas.edu/web/dock.html
Virtual Plant http://virtualplant.bio.nyu.edu/cgi-bin/vpweb/
UPGMA dendogram http://genomes.urv.cat/UPGMA/index.php?entrada=Example1
Construção de internet sites http://andreasviklund.com/